Gap Sequence

[Rita]

I have a problam , is anybody have idea about it?
Is any module there which can find and print gap sequence?
thanks

[xhoster@gmail.com]

"Rita" <ritu_minda@yahoo.co.in> wrote:

> I have a problam , is anybody have idea about it?
> Is any module there which can find and print gap sequence?

"Gap sequence" might be a well-known term of art in your particular field,
but this news group is dedicated to Perl, not your particular field. You
will be more likely to get helpful replies if you explain what a gap
sequence is.

Xho

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[Rita]

> "Gap sequence" might be a well-known term of art in your particular field,
> but this news group is dedicated to Perl, not your particular field. You
> will be more likely to get helpful replies if you explain what a gap
> sequence is.
>

oh, i didn't realize that sorry
i have 2 sequences like
ASDFGHJKLOIUYTREWQ and
ASDHJKLTREWQ

so when we align both sequence there is some GAP like
FG
OIUY.
so is there some module which can find that type of gap sequences.
hope it's better.
thanks

[Gunnar Hjalmarsson]

Rita wrote:

>>"Gap sequence" might be a well-known term of art in your particular field,
>>but this news group is dedicated to Perl, not your particular field. You
>>will be more likely to get helpful replies if you explain what a gap
>>sequence is.
>>

>
> oh, i didn't realize that sorry
> i have 2 sequences like
> ASDFGHJKLOIUYTREWQ and
> ASDHJKLTREWQ
>
> so when we align both sequence there is some GAP like
> FG
> OIUY.
> so is there some module which can find that type of gap sequences.

Search for 'diff' at CPAN.

--
Gunnar Hjalmarsson
Email: [url]http://www.gunnar.cc/cgi-bin/contact.pl[/url]

[Gunnar Hjalmarsson]

Gunnar Hjalmarsson wrote:

> Search for 'diff' at CPAN.

And don't multi-post.
[url]http://www.uwasa.fi/~ts/http/crospost.html[/url]

--
Gunnar Hjalmarsson
Email: [url]http://www.gunnar.cc/cgi-bin/contact.pl[/url]

[John Bokma]

"Rita" <ritu_minda@yahoo.co.in> wrote:

> I have a problam , is anybody have idea about it?
> Is any module there which can find and print gap sequence?

<http://tinyurl.com/2n85t>

left, 4th item in the list :-D

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John Small Perl scripts: [url]http://johnbokma.com/perl/[/url]
Perl programmer available: [url]http://castleamber.com/[/url]
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[John Bokma]

Gunnar Hjalmarsson <noreply@gunnar.cc> wrote:

> Gunnar Hjalmarsson wrote:

>> Search for 'diff' at CPAN.

>
> And don't multi-post.
> [url]http://www.uwasa.fi/~ts/http/crospost.html[/url]

Rita reads only 2% of your reply, so maybe we are lucky :-D

--
John Small Perl scripts: [url]http://johnbokma.com/perl/[/url]
Perl programmer available: [url]http://castleamber.com/[/url]
I ploink googlegroups.com :-)