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Gap Sequence - PERL Modules

I have a problam , is anybody have idea about it? Is any module there which can find and print gap sequence? thanks...

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  1. #1

    Default Gap Sequence

    I have a problam , is anybody have idea about it?
    Is any module there which can find and print gap sequence?
    thanks

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    Rita Guest

  2. #2

    Default Re: Gap Sequence

    "Rita" <ritu_mindayahoo.co.in> wrote:
    > I have a problam , is anybody have idea about it?
    > Is any module there which can find and print gap sequence?
    "Gap sequence" might be a well-known term of art in your particular field,
    but this news group is dedicated to Perl, not your particular field. You
    will be more likely to get helpful replies if you explain what a gap
    sequence is.

    Xho

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  3. #3

    Default Re: Gap Sequence

    > "Gap sequence" might be a well-known term of art in your particular field,
    > but this news group is dedicated to Perl, not your particular field. You
    > will be more likely to get helpful replies if you explain what a gap
    > sequence is.
    >
    oh, i didn't realize that sorry
    i have 2 sequences like
    ASDFGHJKLOIUYTREWQ and
    ASDHJKLTREWQ

    so when we align both sequence there is some GAP like
    FG
    OIUY.
    so is there some module which can find that type of gap sequences.
    hope it's better.
    thanks

    Rita Guest

  4. #4

    Default Re: Gap Sequence

    Rita wrote:
    >>"Gap sequence" might be a well-known term of art in your particular field,
    >>but this news group is dedicated to Perl, not your particular field. You
    >>will be more likely to get helpful replies if you explain what a gap
    >>sequence is.
    >>
    >
    > oh, i didn't realize that sorry
    > i have 2 sequences like
    > ASDFGHJKLOIUYTREWQ and
    > ASDHJKLTREWQ
    >
    > so when we align both sequence there is some GAP like
    > FG
    > OIUY.
    > so is there some module which can find that type of gap sequences.
    Search for 'diff' at CPAN.

    --
    Gunnar Hjalmarsson
    Email: [url]http://www.gunnar.cc/cgi-bin/contact.pl[/url]
    Gunnar Hjalmarsson Guest

  5. #5

    Default Re: Gap Sequence

    Gunnar Hjalmarsson wrote:
    > Search for 'diff' at CPAN.
    And don't multi-post.
    [url]http://www.uwasa.fi/~ts/http/crospost.html[/url]

    --
    Gunnar Hjalmarsson
    Email: [url]http://www.gunnar.cc/cgi-bin/contact.pl[/url]
    Gunnar Hjalmarsson Guest

  6. #6

    Default Re: Gap Sequence

    "Rita" <ritu_mindayahoo.co.in> wrote:
    > I have a problam , is anybody have idea about it?
    > Is any module there which can find and print gap sequence?
    <http://tinyurl.com/2n85t>

    left, 4th item in the list :-D

    --
    John Small Perl scripts: [url]http://johnbokma.com/perl/[/url]
    Perl programmer available: [url]http://castleamber.com/[/url]
    I ploink googlegroups.com :-)

    John Bokma Guest

  7. #7

    Default Re: Gap Sequence

    Gunnar Hjalmarsson <noreplygunnar.cc> wrote:
    > Gunnar Hjalmarsson wrote:
    >> Search for 'diff' at CPAN.
    >
    > And don't multi-post.
    > [url]http://www.uwasa.fi/~ts/http/crospost.html[/url]
    Rita reads only 2% of your reply, so maybe we are lucky :-D

    --
    John Small Perl scripts: [url]http://johnbokma.com/perl/[/url]
    Perl programmer available: [url]http://castleamber.com/[/url]
    I ploink googlegroups.com :-)

    John Bokma Guest

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